Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs998041 | chr21:26080718 | G/T | 0.000531 | 212 | 10.83 | 17.2 | 17.75 | KM Plot |
| KIRP | rs9982422 | chr21:26070950 | A/T | 0.000554 | 211 | 10.83 | 17.13 | 18.47 | KM Plot |
| LAML | rs10642512 | chr6:722740 | G/GCT | 1.36E-8 | 111 | 0 | 12.68 | 16.17 | KM Plot |
| LAML | rs2287907 | chr19:7505566 | G/C | 7.22E-7 | 108 | 15.23 | 14.18 | 1 | KM Plot |
| LAML | rs2788225 | chr6:725040 | A/T | 2.89E-8 | 108 | 0 | 12.68 | 15.2 | KM Plot |
| LAML | rs2788226 | chr6:725479 | C/T | 1.6E-8 | 108 | 0 | 12.17 | 16.17 | KM Plot |
| LAML | rs383133 | chr19:44467096 | A/C | 4.55E-6 | 111 | 18.28 | 10.65 | 1.03 | KM Plot |
| LAML | rs78230363 | chr19:7504017 | C/T | 7.22E-7 | 108 | 15.23 | 14.18 | 1 | KM Plot |
| LGG | rs1001070 | chr1:78518432 | T/A | 4.09E-7 | 397 | 1.23 | 12.03 | 15.7 | KM Plot |
| LGG | rs10023660 | chr4:868739 | A/T | 0.000166 | 407 | 18.37 | 11.43 | 15.83 | KM Plot |
| LGG | rs1002996 | chr6:57022596 | A/G | 3.25E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs10047312 | chr10:63330053 | A/G | 2.73E-5 | 400 | 15.97 | 11.43 | 17.88 | KM Plot |
| LGG | rs10047606 | chr12:70659164 | G/A | 0 | 396 | 0.23 | 18.63 | 14.77 | KM Plot |
| LGG | rs1004941 | chr5:92933534 | T/G | 1.43E-5 | 399 | 14.9 | 16.83 | 18.57 | KM Plot |
| LGG | rs1005045 | chr21:45582545 | T/C | 8.39E-5 | 402 | 4.98 | 15.45 | 15.5 | KM Plot |